[ASAP] Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates”

		BioNMR > Educational resources > Journal club
[ASAP] Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates”

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-31-2021, 10:53 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates”

[ASAP] Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates”

Biochemistry
DOI: 10.1021/acs.biochem.1c00372

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Common Pitfalls and Recommendations for Using a Turbidity Assay to Study Protein Phase Separation Common Pitfalls and Recommendations for Using a Turbidity Assay to Study Protein Phase Separation https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00386/20210809/images/medium/bi1c00386_0008.gif Biochemistry DOI: 10.1021/acs.biochem.1c00386 http://feeds.feedburner.com/~r/acs/bichaw/~4/FWbVq6tkE08 More...	nmrlearner	Journal club	0	08-09-2021 09:44 PM
[NMR paper] Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase The role of biomolecular condensates in regulating biological function and the importance of dynamic interactions involving intrinsically disordered protein regions (IDRs) in their assembly are increasingly appreciated. While computational and theoretical approaches have provided significant insights into IDR phase behavior, establishing the critical interactions that govern condensation with atomic resolution through experiment is more difficult, given the lack of applicability of standard... ...	nmrlearner	Journal club	0	06-02-2021 05:10 PM
Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase [Biophysics and Computational Biology] Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase Tae Hun Kim, Brandon J. Payliss, Michael L. Nosella, Ian T. W. Lee, Yuki Toyama, Julie D. Forman-Kay, Lewis E. Kay... Date: 2021-06-01 The role of biomolecular condensates in regulating biological function and the importance of dynamic interactions involving intrinsically disordered protein regions (IDRs) in their assembly are increasingly appreciated. While computational and theoretical approaches have provided significant insights into IDR phase behavior, establishing the critical...	nmrlearner	Journal club	0	06-01-2021 11:42 PM
[ASAP] The Biochemistry of Survival Motor Neuron Protein Is Paving the Way to Novel Therapies for Spinal Muscle AtrophyPublished as part of the Biochemistry series “Biochemistry to Bedside” The Biochemistry of Survival Motor Neuron Protein Is Paving the Way to Novel Therapies for Spinal Muscle AtrophyPublished as part of the Biochemistry series “Biochemistry to Bedside” https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.9b01124/20200402/images/medium/bi9b01124_0002.gif Biochemistry DOI: 10.1021/acs.biochem.9b01124 http://feeds.feedburner.com/~r/acs/bichaw/~4/YmNXiR52Jpg More...	nmrlearner	Journal club	0	04-03-2020 09:41 PM
[ASAP] Pressure-Sensitive and Osmolyte-Modulated Liquid–Liquid Phase Separation of Eye-Lens ?-Crystallins Pressure-Sensitive and Osmolyte-Modulated Liquid–Liquid Phase Separation of Eye-Lens ?-Crystallins Süleyman Cinar, Hasan Cinar, Hue Sun Chan, Roland Winter https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.8b13636/20190423/images/medium/ja-2018-13636x_0006.gif Journal of the American Chemical Society DOI: 10.1021/jacs.8b13636 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/0k8PRwEgdm4	nmrlearner	Journal club	0	04-24-2019 09:00 AM
NMR of Liquid Crystals - MRC Special Issue NMR of Liquid Crystals - MRC Special Issue http://www.spectroscopynow.com/common/images/thumbnails/148f04aecd3.jpgWritten by a host international experts, this special issue covers recent advances in NMR with respect to its applications to the exciting liquid-crystal field. Read the rest at Spectroscopynow.com	nmrlearner	General	0	10-08-2014 05:52 PM
[NMR900 blog] Special issue of the Journal of Magnetic Resonance Special issue of the Journal of Magnetic Resonance Volume 213, Issue 2, Pages 213-574 (December 2011) Magnetic Moments, Groundbreaking papers from the pages of the Journal of Magnetic Resonance - and recollections from the scientists behind them. http://www.sciencedirect.com/science/journal/10907807/213/2 To celebrate the 2011 International Year of Chemistry JMR has assembled a collection of reprints of some of the most significant papers published in the journal since its inception over 40 years ago. These reprints are accompanied by video/audio commentaries by their authors...	nmrlearner	News from NMR blogs	0	12-11-2011 07:57 AM
[NMR900 blog] Science: Special Issue on Superconductivity Science: Special Issue on Superconductivity Science magazine celebrates the 100th anniversary of the discovery of superconductivity by Heike Kammerlingh Onnes in April 1911. Science, 8 April 2011, volume 332, issue 6026 http://www.sciencemag.org/content/332/6026.toc#SpecialIssue https://blogger.googleusercontent.com/tracker/8663203727601106205-7132561753860074354?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	04-07-2011 11:40 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off