[ASAP] Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins

		BioNMR > Educational resources > Journal club
[ASAP] Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-12-2023, 04:23 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins

[ASAP] Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins

Biochemistry
DOI: 10.1021/acs.biochem.2c00712

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Dynamic Long-Range Interactions Influence Substrate Binding and Catalysis by Human Histidine Triad Nucleotide-Binding Proteins (HINTs), Key Regulators of Multiple Cellular Processes and Activators of Antiviral ProTides Dynamic Long-Range Interactions Influence Substrate Binding and Catalysis by Human Histidine Triad Nucleotide-Binding Proteins (HINTs), Key Regulators of Multiple Cellular Processes and Activators of Antiviral ProTides https://pubs.acs.org/cms/10.1021/acs.biochem.2c00506/asset/images/medium/bi2c00506_0012.gif Biochemistry DOI: 10.1021/acs.biochem.2c00506 More...	nmrlearner	Journal club	0	11-18-2022 11:26 PM
[NMR paper] Third-Generation Covalent TMP-Tag for Fast Labeling and Multiplexed Imaging of Cellular Proteins Third-Generation Covalent TMP-Tag for Fast Labeling and Multiplexed Imaging of Cellular Proteins Angewandte Chemie International Edition, EarlyView. More...	nmrlearner	Journal club	0	07-31-2022 12:26 PM
[ASAP] Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00258/20210802/images/medium/bi1c00258_0009.gif Biochemistry DOI: 10.1021/acs.biochem.1c00258 http://feeds.feedburner.com/~r/acs/bichaw/~4/-Scuwu5rvgc More...	nmrlearner	Journal club	0	08-03-2021 06:03 AM
[ASAP] MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00526/20200817/images/medium/bi0c00526_0007.gif Biochemistry DOI: 10.1021/acs.biochem.0c00526 http://feeds.feedburner.com/~r/acs/bichaw/~4/WU4vLbeA6ls More...	nmrlearner	Journal club	0	08-17-2020 11:58 PM
[ASAP] CRISPR-Cas13-Based RNA-Interacting Protein Detection in Living Cells CRISPR-Cas13-Based RNA-Interacting Protein Detection in Living Cells https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00281/20200429/images/medium/bi0c00281_0001.gif Biochemistry DOI: 10.1021/acs.biochem.0c00281 http://feeds.feedburner.com/~r/acs/bichaw/~4/NV3_snWqzIU More...	nmrlearner	Journal club	0	04-30-2020 02:58 PM
[ASAP] Hinge-Type Dimerization of Proteins by a Tetracysteine Peptide of High Pairing Specificity Hinge-Type Dimerization of Proteins by a Tetracysteine Peptide of High Pairing Specificity https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00475/20180614/images/medium/bi-2018-00475f_0006.gif Biochemistry DOI: 10.1021/acs.biochem.8b00475 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/WiUDl3gyVOs More...	nmrlearner	Journal club	0	06-15-2018 04:21 AM
[NMR paper] NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. Related Articles NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. J Pept Sci. 2017 Jun;23(6):421-430 Authors: Crusca E, Câmara AS, Matos CO, Marchetto R, Cilli EM, Lião LM, Lima de Oliveira A Abstract Antimicrobial peptides are recognized candidates with pharmaceutical potential against epidemic emerging multi-drug resistant bacteria. In this study, we use nuclear magnetic...	nmrlearner	Journal club	0	11-02-2017 10:26 AM
[NMR paper] NMR dynamics-derived insights into the binding properties of a peptide interacting wi NMR dynamics-derived insights into the binding properties of a peptide interacting with an SH2 domain. Related Articles NMR dynamics-derived insights into the binding properties of a peptide interacting with an SH2 domain. Biochemistry. 2005 Jan 18;44(2):694-703 Authors: Finerty PJ, Mittermaier AK, Muhandiram R, Kay LE, Forman-Kay JD The signal transduction protein phospholipase C-gamma1 (PLC-gamma1) is activated when its C-terminal SH2 domain (PLCC) binds the phosphorylated Tyr-1021 site (pTyr-1021) in the beta-platelet-derived growth factor...	nmrlearner	Journal club	0	11-24-2010 11:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off