[ASAP] Orotidine 5'-Monophosphate Decarboxylase: The Operation of Active Site Chains Within and Across Protein Subunits

		BioNMR > Educational resources > Journal club
[ASAP] Orotidine 5'-Monophosphate Decarboxylase: The Operation of Active Site Chains Within and Across Protein Subunits

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-19-2020, 09:51 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Orotidine 5'-Monophosphate Decarboxylase: The Operation of Active Site Chains Within and Across Protein Subunits

[ASAP] Orotidine 5'-Monophosphate Decarboxylase: The Operation of Active Site Chains Within and Across Protein Subunits

Biochemistry
DOI: 10.1021/acs.biochem.0c00241

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Skp1 Dimerization Conceals Its F-Box Protein Binding Site Skp1 Dimerization Conceals Its F-Box Protein Binding Site https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00094/20200413/images/medium/bi0c00094_0005.gif Biochemistry DOI: 10.1021/acs.biochem.0c00094 http://feeds.feedburner.com/~r/acs/bichaw/~4/e-R9Z1H_9Zs More...	nmrlearner	Journal club	0	04-20-2020 05:10 PM
[ASAP] Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.9b00297/20190509/images/medium/bi-2019-00297r_0007.gif Biochemistry DOI: 10.1021/acs.biochem.9b00297 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/MSi2MrzXdfQ More...	nmrlearner	Journal club	0	05-11-2019 07:56 PM
[ASAP] Cyanylated Cysteine Reports Site-Specific Changes at Protein–Protein-Binding Interfaces Without Perturbation Cyanylated Cysteine Reports Site-Specific Changes at Protein–Protein-Binding Interfaces Without Perturbation https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00283/20180605/images/medium/bi-2018-00283c_0004.gif Biochemistry DOI: 10.1021/acs.biochem.8b00283 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/gdWE1PdRzx4 More...	nmrlearner	Journal club	0	06-11-2018 07:38 PM
[ASAP] Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00160/20180417/images/medium/bi-2018-00160h_0009.gif Biochemistry DOI: 10.1021/acs.biochem.8b00160 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/OwwLQPBUNIc More...	nmrlearner	Journal club	0	04-18-2018 01:27 AM
[ASAP] Dynamic Characteristics of Guanosine-5'-monophosphate Reductase Complexes Revealed by High-Resolution 31P Field-Cycling NMR Relaxometry Dynamic Characteristics of Guanosine-5'-monophosphate Reductase Complexes Revealed by High-Resolution 31P Field-Cycling NMR Relaxometry https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00142/20180326/images/medium/bi-2018-00142a_0007.gif Biochemistry DOI: 10.1021/acs.biochem.8b00142 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/VQwUOLCJfLo More...	nmrlearner	Journal club	0	03-27-2018 06:28 AM
[NMR paper] Backbone ¹H, ¹³C, ¹?N NMR assignments of yeast OMP synthase in unliganded form and in complex with orotidine 5'-monophosphate. Backbone ¹H, ¹³C, ¹?N NMR assignments of yeast OMP synthase in unliganded form and in complex with orotidine 5'-monophosphate. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles Backbone ¹H, ¹³C, ¹?N NMR assignments of yeast OMP synthase in unliganded form and in complex with orotidine 5'-monophosphate. Biomol NMR Assign. 2014 Apr;8(1):103-8 Authors: Hansen MR, Harris R, Barr EW, Cheng H, Girvin ME, Grubmeyer C Abstract The...	nmrlearner	Journal club	0	11-14-2014 08:33 AM
[NMR paper] Exploring the active site of human factor Xa protein by NMR screening of small molecu Exploring the active site of human factor Xa protein by NMR screening of small molecule probes. Related Articles Exploring the active site of human factor Xa protein by NMR screening of small molecule probes. Org Biomol Chem. 2003 Dec 7;1(23):4235-41 Authors: Fielding L, Fletcher D, Rutherford S, Kaur J, Mestres J A collection of small molecules (MW < 350 Da) was screened for binding to human factor Xa using saturation transfer difference NMR spectroscopy to detect binding. The NMR screening experiments identified four hits. Binding isotherms...	nmrlearner	Journal club	0	11-24-2010 09:16 PM
[NMR paper] Structural determination of the active site of a sweet protein. A 1H NMR investigatio Structural determination of the active site of a sweet protein. A 1H NMR investigation of pMNEI. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Structural determination of the active site of a sweet protein. A 1H NMR investigation of pMNEI. FEBS Lett. 1992 Sep 21;310(1):27-30 Authors: Tancredi T, Iijima H, Saviano G, Amodeo P, Temussi PA pMNEI, a single chain sweet protein related to monellin, has been studied by means of 1H NMR at 500 MHz. A partial sequential...	nmrlearner	Journal club	0	08-21-2010 11:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off