[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments

		BioNMR > Educational resources > Journal club
[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-20-2018, 01:59 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments

[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments

Biochemistry
DOI: 10.1021/acs.biochem.8b00131

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Bacterial Model Membranes Reshape Fibrillation of a Functional Amyloid Protein Bacterial Model Membranes Reshape Fibrillation of a Functional Amyloid Protein https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00002/20180402/images/medium/bi-2018-00002f_0008.gif Biochemistry DOI: 10.1021/acs.biochem.8b00002 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/IKrC6FWKK6c More...	nmrlearner	Journal club	0	04-03-2018 05:04 AM
Improved Analysis of RNA Localization by SpatiallyRestricted Oxidation of RNA–Protein Complexes Improved Analysis of RNA Localization by SpatiallyRestricted Oxidation of RNA–Protein Complexes http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00053/20180227/images/medium/bi-2018-00053a_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b00053 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/YjBUPNBqDqQ More...	nmrlearner	Journal club	0	02-28-2018 01:42 AM
NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion Publication date: February 2018 Source:Biochimica et Biophysica Acta (BBA) - Biomembranes, Volume 1860, Issue 2</br> Author(s): Mukesh Mahajan, Deepak Chatterjee, Kannaian Bhuvaneswari, Shubhadra Pillay, Surajit Bhattacharjya</br> The lethal Coronaviruses (CoVs), Severe Acute Respiratory Syndrome-associated Coronavirus (SARS-CoV) and most recently Middle East Respiratory Syndrome Coronavirus, (MERS-CoV) are serious human health hazard. A...	nmrlearner	Journal club	0	11-23-2017 08:38 AM
[NMR paper] NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion. NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion. NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion. Biochim Biophys Acta. 2017 Oct 05;: Authors: Mahajan M, Chatterjee D, Bhuvaneswari K, Pillay S, Bhattacharjya S Abstract The lethal Coronaviruses (CoVs), Severe Acute Respiratory Syndrome-associated Coronavirus (SARS-CoV) and most recently Middle East Respiratory Syndrome Coronavirus, (MERS-CoV)...	nmrlearner	Journal club	0	10-11-2017 10:37 AM
[NMR paper] Structural insights of proteins in sub-cellular compartments: in-mitochondria NMR. Structural insights of proteins in sub-cellular compartments: in-mitochondria NMR. Related Articles Structural insights of proteins in sub-cellular compartments: in-mitochondria NMR. Biochim Biophys Acta. 2014 Jun 23; Authors: Barbieri L, Luchinat E, Banci L Abstract Many eukaryotic proteins exert their physiological function in specific cellular compartments. Proteins of the inter-membrane space (IMS) of mitochondria, for example, are synthesized in the cytoplasm and translocate to the IMS, where they are further processed to...	nmrlearner	Journal club	0	06-29-2014 02:00 AM
Structural insights of proteins in sub-cellular compartments: in-mitochondria NMR Structural insights of proteins in sub-cellular compartments: in-mitochondria NMR Publication date: Available online 23 June 2014 Source:Biochimica et Biophysica Acta (BBA) - Molecular Cell Research</br> Author(s): Letizia Barbieri , Enrico Luchinat , Lucia Banci</br> Many eukaryotic proteins exert their physiological function in specific cellular compartments. Proteins of the inter-membrane space (IMS) of mitochondria, for example, are synthesized in the cytoplasm and translocate to the IMS, where they are further processed to their mature form. In-cell Nuclear...	nmrlearner	Journal club	0	06-24-2014 03:40 AM
[NMR paper] Quantitative NMR analysis of Erk activity and inhibition by U0126 in a panel of patient-derived colorectal cancer cell lines. Quantitative NMR analysis of Erk activity and inhibition by U0126 in a panel of patient-derived colorectal cancer cell lines. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Quantitative NMR analysis of Erk activity and inhibition by U0126 in a panel of patient-derived colorectal cancer cell lines. Biochim Biophys Acta. 2013 Jan 26; Authors: Rose HM, Stuiver M, Thongwichian R, Theillet FX, Feller SM, Selenko P Abstract We comparatively analyzed the basal activity...	nmrlearner	Journal club	0	02-03-2013 10:19 AM
[NMR paper] Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and it Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and its application to elucidate long distance information. Related Articles Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and its application to elucidate long distance information. FEBS Lett. 2004 May 21;566(1-3):157-61 Authors: Nomura M, Kobayashi T, Kohno T, Fujiwara K, Tenno T, Shirakawa M, Ishizaki I, Yamamoto K, Matsuyama T, Mishima M, Kojima C The paramagnetic metal chelate complex Cu(2+)-iminodiacetic acid (Cu(2+)-IDA) was...	nmrlearner	Journal club	0	11-24-2010 09:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off