[ASAP] Novel Mechanisms of Molecular Glue-Induced Protein Degradation

		BioNMR > Educational resources > Journal club
[ASAP] Novel Mechanisms of Molecular Glue-Induced Protein Degradation

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-20-2021, 06:33 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Novel Mechanisms of Molecular Glue-Induced Protein Degradation

[ASAP] Novel Mechanisms of Molecular Glue-Induced Protein Degradation

Biochemistry
DOI: 10.1021/acs.biochem.1c00353

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Protein Polymerization as a Novel Targeted Protein Degradation Mechanism Protein Polymerization as a Novel Targeted Protein Degradation Mechanism https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00163/20210324/images/medium/bi1c00163_0002.gif Biochemistry DOI: 10.1021/acs.biochem.1c00163 http://feeds.feedburner.com/~r/acs/bichaw/~4/M4WwqAV_fUM More...	nmrlearner	Journal club	0	03-24-2021 11:20 PM
[ASAP] Staphylococcus aureus Glucose-Induced Biofilm Accessory Protein A (GbaA) Is a Monothiol-Dependent Electrophile Sensor Staphylococcus aureus Glucose-Induced Biofilm Accessory Protein A (GbaA) Is a Monothiol-Dependent Electrophile Sensor https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00347/20200729/images/medium/bi0c00347_0008.gif Biochemistry DOI: 10.1021/acs.biochem.0c00347 http://feeds.feedburner.com/~r/acs/bichaw/~4/aVvLgIVQo9U More...	nmrlearner	Journal club	0	07-30-2020 05:28 PM
[ASAP] Cd(II)- and Pb(II)-Induced Self-Assembly of Peripheral Membrane Domains from Protein Kinase C Cd(II)- and Pb(II)-Induced Self-Assembly of Peripheral Membrane Domains from Protein Kinase C https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b01235/20181228/images/medium/bi-2018-01235k_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b01235 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/zc9miHD6jE8 More...	nmrlearner	Journal club	0	01-07-2019 05:49 AM
[ASAP] The Role of Ionic Liquid Breakdown in the Electrochemical Metallization of VO2: An NMR Study of Gating Mechanisms and VO2 Reduction The Role of Ionic Liquid Breakdown in the Electrochemical Metallization of VO2: An NMR Study of Gating Mechanisms and VO2 Reduction Michael A. Hope, Kent J. Griffith, Bin Cui, Fang Gao, Siân E. Dutton, Stuart S. P. Parkin, Clare P. Grey https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.8b09513/20181121/images/medium/ja-2018-095138_0001.gif Journal of the American Chemical Society DOI: 10.1021/jacs.8b09513 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/vBauA7yiw7s	nmrlearner	Journal club	0	11-25-2018 06:02 AM
[NMR paper] Structural mechanisms for the S-nitrosylation-derived protection of mouse galectin-2 from oxidation-induced inactivation revealed by NMR. Structural mechanisms for the S-nitrosylation-derived protection of mouse galectin-2 from oxidation-induced inactivation revealed by NMR. Structural mechanisms for the S-nitrosylation-derived protection of mouse galectin-2 from oxidation-induced inactivation revealed by NMR. FEBS J. 2018 Feb 02;: Authors: Sakakura M, Tamura M, Fujii N, Takeuchi T, Hatanaka T, Kishimoto S, Arata Y, Takahashi H Abstract Galectin-2 (Gal-2) is a lectin thought to play protective roles in the gastrointestinal tract. Oxidation of mouse Gal-2 (mGal-2)...	nmrlearner	Journal club	0	02-03-2018 02:16 PM
Protein revealed as glue that holds biomolecules within the nucleolus - Phys.Org <img alt="" height="1" width="1"> Protein revealed as glue that holds biomolecules within the nucleolus Phys.Org Researchers have determined that the protein nucleophosmin (NPM1) serves as glue that holds proteins and RNA together in the nucleolus and showed how NPM1's structure makes it ideal for the job. St. Jude Children's Research Hospital scientists led the ... Scientists Reveal Protein That Works as Glue Holding Together Biomolecules Within NucleolusScicasts (press release) (blog) all 3 news articles » Protein revealed as glue that holds biomolecules within the nucleolus...	nmrlearner	Online News	0	03-01-2016 05:59 PM
[NMR paper] Mechanisms of peptide-induced pore formation in lipid bilayers investigated by oriented 31P solid-state NMR spectroscopy. Mechanisms of peptide-induced pore formation in lipid bilayers investigated by oriented 31P solid-state NMR spectroscopy. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.plosone.org-images-pone_120x30.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Mechanisms of peptide-induced pore formation in lipid bilayers investigated by oriented 31P solid-state NMR spectroscopy. PLoS One. 2012;7(10):e47745 Authors: Bertelsen K,...	nmrlearner	Journal club	0	04-02-2013 07:23 PM
[NMR paper] Solid-state NMR analysis of crosslinking in mussel protein glue. Solid-state NMR analysis of crosslinking in mussel protein glue. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Solid-state NMR analysis of crosslinking in mussel protein glue. Arch Biochem Biophys. 1993 Apr;302(1):255-8 Authors: Holl SM, Hansen D, Waite JH, Schaefer J Solid-state 13C and 15N NMR spectra have been obtained of intact adhesive plaques from the mussel Geukensia demissa labeled by L-lysine. The plaques are rich in a polyphenolic protein glue which has 50...	nmrlearner	Journal club	0	08-21-2010 11:53 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off