[ASAP] NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel

		BioNMR > Educational resources > Journal club
[ASAP] NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-08-2022, 08:07 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,791

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel

[ASAP] NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel

Biochemistry
DOI: 10.1021/acs.biochem.2c00378

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Combined Pulsed Electron Double Resonance EPR and Molecular Dynamics Investigations of Calmodulin Suggest Effects of Crowding Agents on Protein Structures Combined Pulsed Electron Double Resonance EPR and Molecular Dynamics Investigations of Calmodulin Suggest Effects of Crowding Agents on Protein Structures https://pubs.acs.org/cms/10.1021/acs.biochem.2c00099/asset/images/medium/bi2c00099_0006.gif Biochemistry DOI: 10.1021/acs.biochem.2c00099 More...	nmrlearner	Journal club	0	08-19-2022 10:43 PM
[ASAP] TRPM5 Channel Binds Calcium-Binding Proteins Calmodulin and S100A1 TRPM5 Channel Binds Calcium-Binding Proteins Calmodulin and S100A1 https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00647/20220228/images/medium/bi1c00647_0009.gif Biochemistry DOI: 10.1021/acs.biochem.1c00647 More...	nmrlearner	Journal club	0	03-02-2022 01:13 PM
[ASAP] A Model for the Solution Structure of Human Fe(II)-Bound Acireductone Dioxygenase and Interactions with the Regulatory Domain of Matrix Metalloproteinase I (MMP-I) A Model for the Solution Structure of Human Fe(II)-Bound Acireductone Dioxygenase and Interactions with the Regulatory Domain of Matrix Metalloproteinase I (MMP-I) https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00724/20201102/images/medium/bi0c00724_0014.gif Biochemistry DOI: 10.1021/acs.biochem.0c00724 http://feeds.feedburner.com/~r/acs/bichaw/~4/mXUEMf3fJu4 More...	nmrlearner	Journal club	0	11-04-2020 05:04 PM
[NMR paper] Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac. Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac. Related Articles Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac. Proc Natl Acad Sci U S A. 2016 Nov 15;: Authors: Kinde MN, Bondarenko V, Granata D, Bu W, Grasty KC, Loll PJ, Carnevale V, Klein ML, Eckenhoff RG, Tang P, Xu Y Abstract Voltage-gated sodium channels (NaV) play an important role in general anesthesia. Electrophysiology measurements...	nmrlearner	Journal club	0	11-20-2016 09:20 PM
NMR-Based Conformational Ensembles Explain pH-Gated Opening and Closing of OmpG Channel NMR-Based Conformational Ensembles Explain pH-Gated Opening and Closing of OmpG Channel Tiandi Zhuang, Christina Chisholm, Min Chen and Lukas K. Tamm http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja408206e/aop/images/medium/ja-2013-08206e_0011.gif Journal of the American Chemical Society DOI: 10.1021/ja408206e http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/UcxM_KhEqyU	nmrlearner	Journal club	0	10-01-2013 11:15 PM
[NMR paper] NMR-based Conformational Ensembles Explain pH-Gated Opening and Closing of OmpG Channel. NMR-based Conformational Ensembles Explain pH-Gated Opening and Closing of OmpG Channel. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles NMR-based Conformational Ensembles Explain pH-Gated Opening and Closing of OmpG Channel. J Am Chem Soc. 2013 Sep 10; Authors: Zhuang T, Chisholm C, Chen M, Tamm LK Abstract The outer membrane protein G (OmpG) is a monomeric 33 kDa 14-stranded ?-barrel membrane protein functioning as a non-specific porin for the uptake of...	nmrlearner	Journal club	0	09-12-2013 11:02 PM
[NMR paper] Characterization of a Cyclic Nucleotide-Activated K(+) Channel and its Lipid Environment by Using Solid-State NMR Spectroscopy. Characterization of a Cyclic Nucleotide-Activated K(+) Channel and its Lipid Environment by Using Solid-State NMR Spectroscopy. Characterization of a Cyclic Nucleotide-Activated K(+) Channel and its Lipid Environment by Using Solid-State NMR Spectroscopy. Chembiochem. 2013 Aug 16; Authors: Cukkemane A, Baldus M Abstract Voltage-gated ion channels are large tetrameric multidomain membrane proteins that play crucial roles in various cellular transduction pathways. Because of their large size and domain-related mobility, structural...	nmrlearner	Journal club	0	08-21-2013 08:49 PM
[NMR paper] Nucleotide sequence and analysis of NMR, a negative-acting regulatory gene in the nit Nucleotide sequence and analysis of NMR, a negative-acting regulatory gene in the nitrogen circuit of Neurospora crassa. Related Articles Nucleotide sequence and analysis of NMR, a negative-acting regulatory gene in the nitrogen circuit of Neurospora crassa. Mol Gen Genet. 1990 Jun;222(1):120-8 Authors: Young JL, Jarai G, Fu YH, Marzluf GA In Neurospora the expression of a set of unlinked structural genes, which allows utilization of various nitrogen-containing compounds, is controlled by the positive-acting nit-2 gene and the negative-acting...	nmrlearner	Journal club	0	08-21-2010 10:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off