[ASAP] MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells

		BioNMR > Educational resources > Journal club
[ASAP] MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-17-2020, 11:58 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells

[ASAP] MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells

Biochemistry
DOI: 10.1021/acs.biochem.0c00526

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Enzymatically Formed Peptide Assemblies Sequestrate Proteins and Relocate Inhibitors to Selectively Kill Cancer Cells Enzymatically Formed Peptide Assemblies Sequestrate Proteins and Relocate Inhibitors to Selectively Kill Cancer Cells Angewandte Chemie International Edition, EarlyView. More...	nmrlearner	Journal club	0	07-11-2020 03:34 PM
[NMR paper] Enzymatically-Formed Peptide Assemblies Sequestrate Proteins and Relocate Inhibitors for Selectively Killing Cancer Cells Enzymatically-Formed Peptide Assemblies Sequestrate Proteins and Relocate Inhibitors for Selectively Killing Cancer Cells Angewandte Chemie International Edition, Accepted Article. More...	nmrlearner	Journal club	0	06-11-2020 06:01 PM
[ASAP] Hydrogen–Deuterium Exchange Supports Independent Membrane-Interfacial Fusion Peptide and Transmembrane Domains in Subunit 2 of Influenza Virus Hemagglutinin Protein, a Structured and Aqueous-Protected Connection between the Fusion Peptide and Hydrogen–Deuterium Exchange Supports Independent Membrane-Interfacial Fusion Peptide and Transmembrane Domains in Subunit 2 of Influenza Virus Hemagglutinin Protein, a Structured and Aqueous-Protected Connection between the Fusion Peptide and Soluble Ectodomain, and the Importance of Membrane Apposition by the Trimer-of-Hairpins Structure https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b01272/20190430/images/medium/bi-2018-01272j_0009.gif Biochemistry DOI: 10.1021/acs.biochem.8b01272...	nmrlearner	Journal club	0	05-02-2019 04:24 AM
[ASAP] Hinge-Type Dimerization of Proteins by a Tetracysteine Peptide of High Pairing Specificity Hinge-Type Dimerization of Proteins by a Tetracysteine Peptide of High Pairing Specificity https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00475/20180614/images/medium/bi-2018-00475f_0006.gif Biochemistry DOI: 10.1021/acs.biochem.8b00475 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/WiUDl3gyVOs More...	nmrlearner	Journal club	0	06-15-2018 04:21 AM
[NMR paper] Photoluminescence Lifetime Imaging of Newly Synthesized Proteins in Living Cells with Iridium-alkyne Probe Photoluminescence Lifetime Imaging of Newly Synthesized Proteins in Living Cells with Iridium-alkyne Probe Designing probes for real-time imaging of dynamic processes in living cells is a continual challenge. Herein, a novel near-infrared photoluminescence probe with long lifetime was exploited for photoluminescence lifetime imaging (PLIM) based on an Iridium-alkyne complex. This probe offers benefits of desirable deep-red to NIR emission, long stokes shift, excellent cell penetration, low cytotoxicity and good resistance to photobleaching. To the best of our knowledge this is the first...	nmrlearner	Journal club	0	09-24-2017 06:16 AM
[NMR paper] Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR. Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR. Bioconjug Chem. 2016 Aug 17;27(8):1796-801 Authors: Jeong K, Netirojjanakul C, Munch HK, Sun J, Finbloom JA, Wemmer DE, Pines A, Francis MB Abstract We have synthesized targeted, selective, and highly sensitive (129)Xe NMR nanoscale biosensors using a...	nmrlearner	Journal club	0	06-20-2017 04:14 PM
[NMR paper] Robust and low cost uniform (15)N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications. Robust and low cost uniform (15)N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications. Robust and low cost uniform (15)N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications. J Struct Biol. 2014 Aug 27; Authors: Meola A, Deville C, Jeffers SA, Guardado-Calvo P, Vasiliauskaite I, Sizun C, Girard-Blanc C, Malosse C, Heijenoort CV, Chamot-Rooke J, Krey T, Guittet E, Pêtres S, Rey FA, Bontems F Abstract Nuclear...	nmrlearner	Journal club	0	09-01-2014 07:46 PM
Robust and low cost uniform 15N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications Robust and low cost uniform 15N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications Publication date: Available online 28 August 2014 Source:Journal of Structural Biology</br> Author(s): Annalisa Meola , Célia Deville , Scott A. Jeffers , Pablo Guardado-Calvo , Ieva Vasiliauskaite , Christina Sizun , Christine Girard-Blanc , Christian Malosse , Carine van Heijenoort , Julia Chamot-Rooke , Thomas Krey , Eric Guittet , Stéphane Pêtres , Félix A. Rey , François Bontems</br> Nuclear magnetic...	nmrlearner	Journal club	0	08-29-2014 05:36 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off