[ASAP] Hydrogen Bonding Compensation on the Convex Solvent-Exposed Helical Face of IA3, an Intrinsically Disordered Protein

		BioNMR > Educational resources > Journal club
[ASAP] Hydrogen Bonding Compensation on the Convex Solvent-Exposed Helical Face of IA3, an Intrinsically Disordered Protein

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-22-2023, 03:10 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Hydrogen Bonding Compensation on the Convex Solvent-Exposed Helical Face of IA3, an Intrinsically Disordered Protein

[ASAP] Hydrogen Bonding Compensation on the Convex Solvent-Exposed Helical Face of IA3, an Intrinsically Disordered Protein

Biochemistry
DOI: 10.1021/acs.biochem.3c00169

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences https://pubs.acs.org/cms/10.1021/acs.biochem.2c00250/asset/images/medium/bi2c00250_0006.gif Biochemistry DOI: 10.1021/acs.biochem.2c00250 More...	nmrlearner	Journal club	0	08-04-2022 01:03 AM
Solvent-dependent segmental dynamics in intrinsically disordered proteins - Science Advances Solvent-dependent segmental dynamics in intrinsically disordered proteins - Science Advances Solvent-dependent segmental dynamics in intrinsically disordered proteins Science Advances Read here	nmrlearner	Online News	0	02-29-2020 09:52 PM
[ASAP] Convergence of Artificial Protein Polymers and Intrinsically Disordered Proteins Convergence of Artificial Protein Polymers and Intrinsically Disordered Proteins https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00056/20180423/images/medium/bi-2018-00056k_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b00056 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/Y2hdVN8M2dU More...	nmrlearner	Journal club	0	04-24-2018 01:29 PM
[ASAP] Structural Regulation of a Neurofilament-Inspired Intrinsically Disordered Protein Brush by Multisite Phosphorylation Structural Regulation of a Neurofilament-Inspired Intrinsically Disordered Protein Brush by Multisite Phosphorylation https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00007/20180405/images/medium/bi-2018-00007d_0006.gif Biochemistry DOI: 10.1021/acs.biochem.8b00007 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/F1MKHnlpmnA More...	nmrlearner	Journal club	0	04-07-2018 03:45 AM
[NMR paper] NMR based solvent exchange experiments to understand the conformational preference of intrinsically disordered proteins using FG-nucleoporin peptide as a model. NMR based solvent exchange experiments to understand the conformational preference of intrinsically disordered proteins using FG-nucleoporin peptide as a model. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary-Button_120x27px_FullText.gif Related Articles NMR based solvent exchange experiments to understand the conformational preference of intrinsically disordered proteins using FG-nucleoporin peptide as a model. Biopolymers. 2013 Sep 4; Authors: Heisel KA, Krishnan VV ...	nmrlearner	Journal club	0	09-17-2013 11:36 PM
[NMR paper] A comparison of convex and non-convex compressed sensing applied to multidimensional NMR. A comparison of convex and non-convex compressed sensing applied to multidimensional NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles A comparison of convex and non-convex compressed sensing applied to multidimensional NMR. J Magn Reson. 2012 Oct;223:1-10 Authors: Kazimierczuk K, Orekhov VY Abstract The resolution of multidimensional NMR spectra can be severely limited when regular sampling based on the Nyquist-Shannon theorem is used. The...	nmrlearner	Journal club	0	02-23-2013 01:51 PM
Simultaneous convection compensation and solvent suppression in biomolecular NMR diffusion experiments Simultaneous convection compensation and solvent suppression in biomolecular NMR diffusion experiments Abstract Thermal convection and high intensity solvent resonances can significantly hamper diffusion estimates in pulsed gradient spin-echo nuclear magnetic resonance diffusion experiments on biomolecule samples. To overcome these two problems, a new double functional NMR diffusion sequence, double echo PGSTE-WATERGATE, is presented. The new sequence provides excellent convection compensation and solvent suppression (with a suppression factor in excess of at least 105 in a single scan)...	nmrlearner	Journal club	0	01-09-2011 12:46 PM
[NMR paper] Hydrogen bonding on the ice-binding face of a beta-helical antifreeze protein indicat Hydrogen bonding on the ice-binding face of a beta-helical antifreeze protein indicated by amide proton NMR chemical shifts. Related Articles Hydrogen bonding on the ice-binding face of a beta-helical antifreeze protein indicated by amide proton NMR chemical shifts. Biochemistry. 2004 Oct 19;43(41):13012-7 Authors: Daley ME, Graether SP, Sykes BD The dependence of amide proton chemical shifts on temperature is used as an indication of the hydrogen bonding properties in a protein. The amide proton temperature coefficients of the beta-helical...	nmrlearner	Journal club	0	11-24-2010 10:01 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off