[ASAP] Differential Protein Citrullination in Human ER– and ER+ Tumor and Adjacent Healthy Breast Tissue

		BioNMR > Educational resources > Journal club
[ASAP] Differential Protein Citrullination in Human ER– and ER+ Tumor and Adjacent Healthy Breast Tissue

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-10-2023, 08:09 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Differential Protein Citrullination in Human ER– and ER+ Tumor and Adjacent Healthy Breast Tissue

[ASAP] Differential Protein Citrullination in Human ER– and ER+ Tumor and Adjacent Healthy Breast Tissue

Biochemistry
DOI: 10.1021/acs.biochem.2c00551

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Replication Protein A Utilizes Differential Engagement of Its DNA-Binding Domains to Bind Biologically Relevant ssDNAs in Diverse Binding Modes Replication Protein A Utilizes Differential Engagement of Its DNA-Binding Domains to Bind Biologically Relevant ssDNAs in Diverse Binding Modes https://pubs.acs.org/cms/10.1021/acs.biochem.2c00504/asset/images/medium/bi2c00504_0011.gif Biochemistry DOI: 10.1021/acs.biochem.2c00504 More...	nmrlearner	Journal club	0	10-26-2022 07:20 AM
[ASAP] RNA Binding by the KTS Splice Variants of Wilms’ Tumor Suppressor Protein WT1 RNA Binding by the KTS Splice Variants of Wilms’ Tumor Suppressor Protein WT1 https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00602/20200929/images/medium/bi0c00602_0009.gif Biochemistry DOI: 10.1021/acs.biochem.0c00602 http://feeds.feedburner.com/~r/acs/bichaw/~4/2xrVuumB-0s More...	nmrlearner	Journal club	0	09-29-2020 07:53 PM
[NMR paper] Human urine 1H NMR metabolomics reveals alterations of the protein and carbohydrate metabolism when comparing habitual Average Danish diet vs. healthy New Nordic diet. Human urine 1H NMR metabolomics reveals alterations of the protein and carbohydrate metabolism when comparing habitual Average Danish diet vs. healthy New Nordic diet. Related Articles Human urine 1H NMR metabolomics reveals alterations of the protein and carbohydrate metabolism when comparing habitual Average Danish diet vs. healthy New Nordic diet. Nutrition. 2020 May 22;79-80:110867 Authors: Trimigno A, Khakimov B, Savorani F, Poulsen SK, Astrup A, Dragsted LO, Engelsen SB Abstract OBJECTIVES: The aim of this study was to...	nmrlearner	Journal club	0	07-04-2020 09:21 PM
[ASAP] A Conformational Switch in the Zinc Finger Protein Kaiso Mediates Differential Readout of Specific and Methylated DNA Sequences A Conformational Switch in the Zinc Finger Protein Kaiso Mediates Differential Readout of Specific and Methylated DNA Sequences https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00253/20200512/images/medium/bi0c00253_0006.gif Biochemistry DOI: 10.1021/acs.biochem.0c00253 http://feeds.feedburner.com/~r/acs/bichaw/~4/EBEbhBqSLKs More...	nmrlearner	Journal club	0	05-13-2020 09:14 PM
[NMR tweet] Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening: As e Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening: As explained in the previous arti... http://bit.ly/bcqLcs Published by soni2006 (Rajinder Soni) on 2010-10-16T05:39:39Z Source: Twitter	nmrlearner	Twitter NMR	0	10-16-2010 05:58 AM
[NMR tweet] Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening: As e Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening: As explained in the previous arti... http://bit.ly/bcqLcs Published by soni2006 (Rajinder Soni) on 2010-10-16T05:39:39Z Source: Twitter	nmrlearner	Twitter NMR	0	10-16-2010 05:58 AM
[NMR tweet] #hubpages Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Scree #hubpages Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening http://bit.ly/bcqLcs Published by Q2A4U (Question_Answer) on 2010-10-16T04:49:29Z Source: Twitter	nmrlearner	Twitter NMR	0	10-16-2010 05:58 AM
[NMR tweet] Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening http Use of Nuclear Magnetic Resonance and Breast Biopsy for Breast Cancer Screening http://ping.fm/eCNX2 Published by soni2006 (Rajinder Soni) on 2010-10-16T04:14:14Z Source: Twitter	nmrlearner	Twitter NMR	0	10-16-2010 04:47 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off