[ASAP] Correction to “How Sugars Protect Dry Protein Structure”

		BioNMR > Educational resources > Journal club
[ASAP] Correction to “How Sugars Protect Dry Protein Structure”

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-13-2023, 11:15 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Correction to “How Sugars Protect Dry Protein Structure”

[ASAP] Correction to “How Sugars Protect Dry Protein Structure”

Biochemistry
DOI: 10.1021/acs.biochem.3c00107

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] How Sugars Protect Dry Protein Structure How Sugars Protect Dry Protein Structure https://pubs.acs.org/cms/10.1021/acs.biochem.2c00692/asset/images/medium/bi2c00692_0006.gif Biochemistry DOI: 10.1021/acs.biochem.2c00692 More...	nmrlearner	Journal club	0	02-19-2023 06:02 AM
[ASAP] Correction to Dried Protein Structure Revealed at the Residue Level by Liquid-Observed Vapor Exchange NMR Correction to Dried Protein Structure Revealed at the Residue Level by Liquid-Observed Vapor Exchange NMR Biochemistry DOI: 10.1021/acs.biochem.1c00799 More...	nmrlearner	Journal club	0	01-08-2022 02:36 AM
Correction to: An automated iterative approach for protein structure refinement using pseudocontact shifts Correction to: An automated iterative approach for protein structure refinement using pseudocontact shifts Source: Journal of Biomolecular NMR	nmrlearner	Journal club	0	10-14-2021 07:49 PM
[ASAP] Correction to “Site-Specific Labeling and 19F NMR Provide Direct Evidence for Dynamic Behavior of the Anthrax Toxin Pore ?-Clamp Structure” Correction to “Site-Specific Labeling and 19F NMR Provide Direct Evidence for Dynamic Behavior of the Anthrax Toxin Pore ?-Clamp Structure” Biochemistry DOI: 10.1021/acs.biochem.1c00222 http://feeds.feedburner.com/~r/acs/bichaw/~4/pSceQzBVGcE More...	nmrlearner	Journal club	0	04-08-2021 02:53 AM
[ASAP] Correction to “Inhibitor Complexes of the Pseudomonas Serine-Carboxyl Proteinase” Correction to “Inhibitor Complexes of the Pseudomonas Serine-Carboxyl Proteinase” Biochemistry DOI: 10.1021/acs.biochem.8b01130 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/5CxU0rUgAUg More...	nmrlearner	Journal club	0	11-25-2018 06:02 AM
Correction for Li et al., Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion [Correction] Correction for Li et al., Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion ... Date: 2013-11-26 BIOPHYSICS AND COMPUTATIONAL BIOLOGY Correction for “Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion,” by Ying Li, Nicole L. Altorelli, Fabiana Bahna, Barry Honig, Lawrence Shapiro, and Arthur G. Palmer III, which appeared in issue 41, October 8, 2013, of Proc Natl Acad Sci USA (110:16462–16467; first published September... Read More PNAS: Number: 48	nmrlearner	Journal club	0	11-27-2013 01:50 AM
Protein that boosts longevity may protect against diabetes - R & D Magazine Protein that boosts longevity may protect against diabetes - R & D Magazine <img alt="" height="1" width="1" /> Protein that boosts longevity may protect against diabetes R & D Magazine A protein that slows aging in mice and other animals also protects against the ravages of a high-fat diet, including diabetes, according to a new MIT study. MIT biology professor ... JEOL to launch world's smallest solid-state NMR probe. Apr 12 ... Read here	nmrlearner	Online News	0	08-09-2012 08:10 AM
Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution Abstract Random coil chemical shifts are necessary for secondary chemical shift analysis, which is the main NMR method for identification of secondary structure in proteins. One of the largest challenges in the determination of random coil chemical shifts is accounting for the effect of neighboring residues. The contributions from the neighboring residues are typically removed by using neighbor correction factors determined based on each...	nmrlearner	Journal club	0	06-06-2011 12:53 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off