[ASAP] Chemoproteomic Analysis of Microbiota MetaboliteProtein Targets and Mechanisms

		BioNMR > Educational resources > Journal club
[ASAP] Chemoproteomic Analysis of Microbiota MetaboliteProtein Targets and Mechanisms

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-08-2022, 02:36 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Chemoproteomic Analysis of Microbiota MetaboliteProtein Targets and Mechanisms

[ASAP] Chemoproteomic Analysis of Microbiota MetaboliteProtein Targets and Mechanisms

Biochemistry
DOI: 10.1021/acs.biochem.1c00758

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Novel Mechanisms of Molecular Glue-Induced Protein Degradation Novel Mechanisms of Molecular Glue-Induced Protein Degradation https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00353/20210719/images/medium/bi1c00353_0002.gif Biochemistry DOI: 10.1021/acs.biochem.1c00353 http://feeds.feedburner.com/~r/acs/bichaw/~4/NEVVpMINF_s More...	nmrlearner	Journal club	0	07-20-2021 06:33 AM
[ASAP] Optogenetic Analysis of Allosteric Control in Protein Tyrosine Phosphatases Optogenetic Analysis of Allosteric Control in Protein Tyrosine Phosphatases https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00841/20210115/images/medium/bi0c00841_0004.gif Biochemistry DOI: 10.1021/acs.biochem.0c00841 http://feeds.feedburner.com/~r/acs/bichaw/~4/VnMZ9jCKgw8 More...	nmrlearner	Journal club	0	01-16-2021 04:55 PM
[ASAP] Comparative Analysis of CPI-Motif Regulation of Biochemical Functions of Actin Capping Protein Comparative Analysis of CPI-Motif Regulation of Biochemical Functions of Actin Capping Protein https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00092/20200310/images/medium/bi0c00092_0014.gif Biochemistry DOI: 10.1021/acs.biochem.0c00092 http://feeds.feedburner.com/~r/acs/bichaw/~4/-PoKJ0KXLq0 More...	nmrlearner	Journal club	0	03-16-2020 04:59 PM
[ASAP] Unraveling the Reaction Mechanisms of SiO Anodes for Li-Ion Batteries by Combining in Situ 7Li and ex Situ 7Li/29Si Solid-State NMR Spectroscopy Unraveling the Reaction Mechanisms of SiO Anodes for Li-Ion Batteries by Combining in Situ 7Li and ex Situ 7Li/29Si Solid-State NMR Spectroscopy Keitaro Kitada, Oliver Pecher, Pieter C. M. M. Magusin, Matthias F. Groh, Robert S. Weatherup, Clare P. Grey https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.9b01589/20190423/images/medium/ja-2019-01589u_0009.gif Journal of the American Chemical Society DOI: 10.1021/jacs.9b01589 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA...	nmrlearner	Journal club	0	04-23-2019 07:54 PM
[ASAP] The Role of Ionic Liquid Breakdown in the Electrochemical Metallization of VO2: An NMR Study of Gating Mechanisms and VO2 Reduction The Role of Ionic Liquid Breakdown in the Electrochemical Metallization of VO2: An NMR Study of Gating Mechanisms and VO2 Reduction Michael A. Hope, Kent J. Griffith, Bin Cui, Fang Gao, Siân E. Dutton, Stuart S. P. Parkin, Clare P. Grey https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.8b09513/20181121/images/medium/ja-2018-095138_0001.gif Journal of the American Chemical Society DOI: 10.1021/jacs.8b09513 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/vBauA7yiw7s	nmrlearner	Journal club	0	11-25-2018 06:02 AM
[ASAP] Identifying the Protein Interactions of the Cytosolic Iron–Sulfur Cluster Targeting Complex Essential for Its Assembly and Recognition of Apo-Targets Identifying the Protein Interactions of the Cytosolic Iron–Sulfur Cluster Targeting Complex Essential for Its Assembly and Recognition of Apo-Targets https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00072/20180409/images/medium/bi-2017-00072x_0007.gif Biochemistry DOI: 10.1021/acs.biochem.7b00072 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/4KHGVmMLJ6o More...	nmrlearner	Journal club	0	04-10-2018 12:35 AM
Investigating Sodium Storage Mechanisms in Tin Anodes: A Combined Pair Distribution Function Analysis, Density Functional Theory, and Solid-State NMR Approach Investigating Sodium Storage Mechanisms in Tin Anodes: A Combined Pair Distribution Function Analysis, Density Functional Theory, and Solid-State NMR Approach Joshua M. Stratford, Martin Mayo, Phoebe K. Allan, Oliver Pecher, Olaf J. Borkiewicz, Kamila M. Wiaderek, Karena W. Chapman, Chris J. Pickard, Andrew J. Morris and Clare P. Grey http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.7b01398/20170516/images/medium/ja-2017-01398w_0008.gif Journal of the American Chemical Society DOI: 10.1021/jacs.7b01398 ...	nmrlearner	Journal club	0	05-17-2017 12:46 PM
Pair Distribution Function Analysis and Solid State NMR Studies of Silicon Electrodes for Lithium Ion Batteries: Understanding the (De)lithiation Mechanisms Pair Distribution Function Analysis and Solid State NMR Studies of Silicon Electrodes for Lithium Ion Batteries: Understanding the (De)lithiation Mechanisms Baris Key, Mathieu Morcrette, Jean-Marie Tarascon and Clare P. Grey http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja108085d/aop/images/medium/ja-2010-08085d_0006.gif Journal of the American Chemical Society DOI: 10.1021/ja108085d http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/WYK7o0vOALs	nmrlearner	Journal club	0	12-21-2010 02:14 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off