[NMR paper] Peak picking multidimensional NMR spectra with the contour geometry based algorithm CYPICK.
Peak picking multidimensional NMR spectra with the contour geometry based algorithm CYPICK.
Related Articles Peak picking multidimensional NMR spectra with the contour geometry based algorithm CYPICK.
J Biomol NMR. 2017 Feb 03;:
Authors: Würz JM, Güntert P
Abstract
The automated identification of signals in multidimensional NMR spectra is a challenging task, complicated by signal overlap, noise, and spectral artifacts, for which no universally accepted method is available. Here, we present a new peak picking algorithm, CYPICK,...
nmrlearner
Journal club
0
02-06-2017 11:28 AM
Peak picking multidimensional NMR spectra with the contour geometry based algorithm CYPICK
Peak picking multidimensional NMR spectra with the contour geometry based algorithm CYPICK
Abstract
The automated identification of signals in multidimensional NMR spectra is a challenging task, complicated by signal overlap, noise, and spectral artifacts, for which no universally accepted method is available. Here, we present a new peak picking algorithm, CYPICK, that follows, as far as possible, the manual approach taken by a spectroscopist who analyzes peak patterns in contour plots of the spectrum, but is fully automated. Human visual inspection...
nmrlearner
Journal club
0
02-03-2017 09:55 PM
[NMR paper] The determination of pair distance distribution by double electron-electron resonance: Regularization by the length of distance discretization with Monte Carlo calculations
The determination of pair distance distribution by double electron-electron resonance: Regularization by the length of distance discretization with Monte Carlo calculations
Publication date: Available online 2 June 2016
Source:Journal of Magnetic Resonance</br>
Author(s): Sergei A. Dzuba</br>
Pulsed double electron-electron resonance technique (DEER, or PELDOR) is applied to study conformations and aggregation of peptides, proteins, nucleic acids, and other macromolecules. For a pair of spin labels, experimental data allows for determination of their distance...
nmrlearner
Journal club
0
06-03-2016 04:52 PM
[NMR paper] Computer Vision - Based Automated Peak Picking Applied to Protein NMR Spectra.
Computer Vision - Based Automated Peak Picking Applied to Protein NMR Spectra.
Related Articles Computer Vision - Based Automated Peak Picking Applied to Protein NMR Spectra.
Bioinformatics. 2015 May 20;
Authors: Klukowski P, Walczak MJ, Gonczarek A, Boudet J, Wider G
Abstract
MOTIVATION: A detailed analysis of multidimensional NMR spectra of macromolecules requires the identification of individual resonances (peaks). This task can be tedious and time-consuming and often requires support by experienced users. Automated peak...
nmrlearner
Journal club
0
05-23-2015 10:08 AM
[NMR paper] Development of Fragment-Based n-FABS NMR Screening Applied to the Membrane Enzyme FAAH.
Development of Fragment-Based n-FABS NMR Screening Applied to the Membrane Enzyme FAAH.
Development of Fragment-Based n-FABS NMR Screening Applied to the Membrane Enzyme FAAH.
Chembiochem. 2013 Aug 5;
Authors: Lambruschini C, Veronesi M, Romeo E, Garau G, Bandiera T, Piomelli D, Scarpelli R, Dalvit C
Abstract
Despite the recognized importance of membrane proteins as pharmaceutical targets, the reliable identification of fragment hits that are able to bind these proteins is still a major challenge. Among different (19) F NMR...
nmrlearner
Journal club
0
08-07-2013 01:24 PM
1H NMR Chemical Shift Calculations as a Probe of Supramolecular Host–Guest Geometry
1H NMR Chemical Shift Calculations as a Probe of Supramolecular Host–Guest Geometry
Jeffrey S. Mugridge, Robert G. Bergman and Kenneth N. Raymond
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja202254x/aop/images/medium/ja-2011-02254x_0010.gif
Journal of the American Chemical Society
DOI: 10.1021/ja202254x
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/wR-1b5WtJhc
nmrlearner
Journal club
0
06-30-2011 05:01 AM
[NMR paper] Conformational analysis by NMR and distance geometry techniques of a peptide mimetic
Conformational analysis by NMR and distance geometry techniques of a peptide mimetic of the third helix of the Antennapedia homeodomain.
Related Articles Conformational analysis by NMR and distance geometry techniques of a peptide mimetic of the third helix of the Antennapedia homeodomain.
J Pept Res. 2005 Feb;65(2):200-8
Authors: Saviano M, Isernia C, Bassarello C, Di Lello P, Galdiero S, Mierke DF, Benedetti E, Pedone C
The Antennapedia homeodomain structure consists of four helices. The helices II and III are connected by a tripeptide that...