[ASAP] 19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies

		BioNMR > Educational resources > Journal club
[ASAP] 19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-02-2019, 01:35 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] 19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies

[ASAP] 19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies

Manman Lu, Mingzhang Wang, Ivan V. Sergeyev, Caitlin M. Quinn, Jochem Struppe, Melanie Rosay, Werner Maas, Angela M. Gronenborn, Tatyana Polenova

Journal of the American Chemical Society
DOI: 10.1021/jacs.8b09216

Source: Journal of the American Chemical Society

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies #DNPNMR From The DNP-NMR Blog: 19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies #DNPNMR This is great work showing off the capabilities of DNP to study 19F in biological samples.	nmrlearner	News from NMR blogs	0	03-25-2019 08:37 PM
Dynamic Nuclear Polarization-Enhanced Biomolecular NMR Spectroscopy at High Magnetic Field with Fast Magic-Angle Spinning #DNPNMR From The DNP-NMR Blog: Dynamic Nuclear Polarization-Enhanced Biomolecular NMR Spectroscopy at High Magnetic Field with Fast Magic-Angle Spinning #DNPNMR Jaudzems, Kristaps, Andrea Bertarello, Sachin R. Chaudhari, Andrea Pica, Diane Cala-De Paepe, Emeline Barbet-Massin, Andrew J. Pell, et al. “Dynamic Nuclear Polarization-Enhanced Biomolecular NMR Spectroscopy at High Magnetic Field with Fast Magic-Angle Spinning.” Angewandte Chemie 0 (2018). https://doi.org/10.1002/ange.201801016.	nmrlearner	News from NMR blogs	0	07-06-2018 09:40 AM
[NMR paper] Dynamic nuclear polarization enhanced biomolecular NMR spectroscopy at high magnetic field with fast magic-angle spinning. Dynamic nuclear polarization enhanced biomolecular NMR spectroscopy at high magnetic field with fast magic-angle spinning. Dynamic nuclear polarization enhanced biomolecular NMR spectroscopy at high magnetic field with fast magic-angle spinning. Angew Chem Int Ed Engl. 2018 Mar 22;: Authors: Jaudzems K, Bertarello A, Chaudhari SR, Pica A, Cala-De Paepe D, Barbet-Massin E, Pell AJ, Akopjana I, Kotelovica S, Gajan D, Ouari O, Tars K, Pintacuda G, Lesage A Abstract Dynamic nuclear polarization (DNP) represents a powerful way to...	nmrlearner	Journal club	0	03-23-2018 11:18 AM
Dynamic nuclear polarization at 40 kHz magic angle spinning #DNPNMR From The DNP-NMR Blog: Dynamic nuclear polarization at 40 kHz magic angle spinning #DNPNMR Chaudhari, S.R., et al., Dynamic nuclear polarization at 40 kHz magic angle spinning. Phys Chem Chem Phys, 2016. 18(15): p. 10616-22. http://www.ncbi.nlm.nih.gov/pubmed/27035630	nmrlearner	News from NMR blogs	0	08-23-2016 01:02 AM
Instrumentation for solid-state dynamic nuclear polarization with magic angle spinning NMR From The DNP-NMR Blog: Instrumentation for solid-state dynamic nuclear polarization with magic angle spinning NMR Rosay, M., M. Blank, and F. Engelke, Instrumentation for solid-state dynamic nuclear polarization with magic angle spinning NMR. J Magn Reson, 2016. 264: p. 88-98. http://www.ncbi.nlm.nih.gov/pubmed/26920834	nmrlearner	News from NMR blogs	0	04-18-2016 03:17 PM
Theoretical Aspects of Magic Angle Spinning - Dynamic Nuclear Polarization From The DNP-NMR Blog: Theoretical Aspects of Magic Angle Spinning - Dynamic Nuclear Polarization Mentink-Vigier, F., et al., Theoretical Aspects of Magic Angle Spinning - Dynamic Nuclear Polarization. J. Magn. Reson., 2015. http://www.sciencedirect.com/science/article/pii/S1090780715001500	nmrlearner	News from NMR blogs	0	07-27-2015 10:41 PM
[NMR paper] Magic Angle Spinning NMR of Proteins: High-Frequency Dynamic Nuclear Polarization and (1)H Detection. Magic Angle Spinning NMR of Proteins: High-Frequency Dynamic Nuclear Polarization and (1)H Detection. Magic Angle Spinning NMR of Proteins: High-Frequency Dynamic Nuclear Polarization and (1)H Detection. Annu Rev Biochem. 2015 Mar 30; Authors: Su Y, Andreas L, Griffin RG Abstract Magic angle spinning (MAS) NMR studies of amyloid and membrane proteins and large macromolecular complexes are an important new approach to structural biology. However, the applicability of these experiments, which are based on (13)C- and...	nmrlearner	Journal club	0	04-04-2015 05:31 PM
[NMR paper] Magic Angle Spinning NMR Reveals Sequence-Dependent Structural Plasticity, Dynamics, and the Spacer Peptide 1 Conformation in HIV-1 Capsid Protein Assemblies. Magic Angle Spinning NMR Reveals Sequence-Dependent Structural Plasticity, Dynamics, and the Spacer Peptide 1 Conformation in HIV-1 Capsid Protein Assemblies. Magic Angle Spinning NMR Reveals Sequence-Dependent Structural Plasticity, Dynamics, and the Spacer Peptide 1 Conformation in HIV-1 Capsid Protein Assemblies. J Am Chem Soc. 2013 Oct 28; Authors: Han Y, Hou G, Suiter CL, Ahn J, Byeon IJ, Lipton AS, Burton SD, Hung I, Gor'kov PL, Gan Z, Brey WW, Rice D, Gronenborn AM, Polenova TE Abstract A key stage in HIV-1 maturation towards...	nmrlearner	Journal club	0	10-30-2013 10:44 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off