Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore at National I

		BioNMR > NMR career > Job marketplace
Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore at National I

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-19-2010, 02:44 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore at National I

Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore at National Institute of Diabetes and Digestive and Kidney Diseases (niddk) (Bethesda, MD)

for individuals interested in the application of solution NMR spectorscopy to study the structure and dynamics of ... NMR methods to extend the limits of applicability of the NMR method, development of computational tools to...

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR Structural Biology and Biophysics of Protein:Protein Complexes, National Cancer Institute, Frederick, MD, United States NMR Structural Biology and Biophysics of Protein:Protein Complexes, National Cancer Institute, Frederick, MD, United States Postdoctoral positions are available in the Macromolecular NMR section of the Structural Biophysics Laboratory headed by Dr. R. Andrew Byrd at the National Cancer Institute. The Byrd lab combines NMR structural biology & Small Angle Xray Scattering (... More...	nmrlearner	Job marketplace	0	11-15-2011 11:36 PM
Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions. Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions. Structure, Dynamics, and Kinetics of Weak Protein-Protein Complexes from NMR Spin Relaxation Measurements of Titrated Solutions. Angew Chem Int Ed Engl. 2011 Mar 18; Authors: Salmon L, Ortega Roldan JL, Lescop E, Licinio A, van Nuland N, Jensen MR, Blackledge M	nmrlearner	Journal club	0	03-23-2011 05:41 PM
Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Prog Nucl Magn Reson Spectrosc. 2011 Feb;58(1-2):1-61 Authors: Dominguez C, Schubert M, Duss O, Ravindranathan S, Allain FH	nmrlearner	Journal club	0	01-19-2011 11:18 AM
[NMR paper] Structure and dynamics of MarA-DNA complexes: an NMR investigation. Structure and dynamics of MarA-DNA complexes: an NMR investigation. Related Articles Structure and dynamics of MarA-DNA complexes: an NMR investigation. J Mol Biol. 2001 Nov 16;314(1):113-27 Authors: Dangi B, Pelupessey P, Martin RG, Rosner JL, Louis JM, Gronenborn AM An unanswered question regarding gene regulation is how certain proteins are capable of binding to DNA with high affinity at specific but highly degenerate consensus sequences. We have investigated the interactions between the Escherichia coli transcription factor, MarA, and its...	nmrlearner	Journal club	0	11-19-2010 08:44 PM
[NMR paper] Structure prediction of protein complexes by an NMR-based protein docking algorithm. Structure prediction of protein complexes by an NMR-based protein docking algorithm. Related Articles Structure prediction of protein complexes by an NMR-based protein docking algorithm. J Biomol NMR. 2001 May;20(1):15-21 Authors: Kohlbache O, Burchardt A, Moll A, Hildebrandt A, Bayer P, Lenhof HP Protein docking algorithms can be used to study the driving forces and reaction mechanisms of docking processes. They are also able to speed up the lengthy process of experimental structure elucidation of protein complexes by proposing potential...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 6 October 2010</br> Cyril, Dominguez , Mario, Schubert , Olivier, Duss , Sapna, Ravindranathan , Frédéric H.-T., Allain</br> More...	nmrlearner	Journal club	0	10-07-2010 02:32 PM
Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore, National Ins Structure and Dynamics of Protein Complexes by NMR, Dr. G. Marius Clore, National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), Bethesda, MD, United States Post-doctoral positions are open for individuals interested in the application of solution NMR spectorscopy to study the structure and dynamics of large protein complexes. Interests in the lab are focussed on signal transduction, transcriptional... More...	nmrlearner	Job marketplace	0	09-28-2010 10:03 PM
[NMR paper] NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and co NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and coupled protein folding. Related Articles NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and coupled protein folding. Q Rev Biophys. 1999 Feb;32(1):57-98 Authors: HÃ¤rd T	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off