postdoctoral position in biomolecular NMR

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postdoctoral position in biomolecular NMR

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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09-15-2010, 04:10 PM

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postdoctoral position in biomolecular NMR

postdoctoral position in biomolecular NMR

A postdoctoral position in biomolecular NMR is available immediately at The
City College of New York (CCNY) located in New York City.

The selected candidate will work on a project that aims to deduce the
structural and dynamics of nick recognition and repair by DNA ligases (J. Mol.
Biol. 2010, 395, 291-308), and will join a group that includes graduate
students, postdoctoral associates and senior scientists.

The group has significant access to the NMR facilities in-house (600 MHz with a
cryoprobe) and to those at the New York Structural Biology Center (NYSBC,
500-900 all with cryoprobes). In addition, access to crystallization and
screening facilities (NYSBC) and the X4A, X4C beamlines (NSLS, Brookhaven
National Lab.) will also be available. The NYSBC is situated on the CCNY campus
a few yards from the laboratory and is the largest such center in the United
States.

Potential applicants are expected to have extensive experience in biomolecular
NMR spectroscopy and in the expression, purification and biochemical
characterization of proteins. Applicants are requested to send their CVs and
three letters of recommendation by email to Ronnie Ghose (rghose@ghoselab.org).
A highly competitive salary and benefits package is available.

Additional information may be obtained from the group website www.ghoselab.org.

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