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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 08-21-2012, 02:05 PM
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Default PostDoc Basel

PostDoc Basel

Postdoctoral position in membrane protein structural biology with NMR A postdoctoral position is available in the group of Prof. Sebastian Hiller at the Biozentrum of the University Basel. We are studying structure, function and folding of integral membrane proteins and their complexes using solution and solid-state NMR, as well as complementary biophysical methods. Our projects generally address fundamental biological systems of high impact. The postdoctoral research project concerns the structure determination of a membrane protein complex using solution NMR as the main technique. Subsequently, the functioning of the protein complex and its interactions with substrates are characterized. An integral part of our projects is the use and development of state-of-the-art preparative, biochemical and NMR techniques. Interested candidates need a Ph.D. in Biochemistry, Biophysics, Structural or Molecular Biology or related fields. Expertise in at least one of the following areas is mandatory: NMR, protein biochemistry, membrane proteins, molecular biology. The successful candidate is highly motivated, creative and capable of independent research in a team environment. Communication skills in oral and written English are essential. The position and the research projects are long-term funded by the European Research Commission and the Swiss National Science Foundation. We offer an exciting and enthusiastic work environment with scientific collaborations in the institute and worldwide. The Biozentrum Basel is one of the leading biomedical research institutions in Switzerland and has recently been placed among the Top 10 international “Best Places to Work for Postdocs” by The Scientist magazine. Facilities for structural biology include 600, 700 and 800 MHz Bruker spectrometers equipped with cryogenic and magic angle spinning probes. Salary and benefits are attractive, following the guidelines of the Swiss National Science Foundation. The start date is available as of immediately or on mutual agreement. Applications and informal queries about the lab and research projects should be directed by email to Sebastian Hiller. Applications must include a letter of motivation summarizing current and future research interests, a CV, list of publications and contact information for at least two references. Prof. Sebastian Hiller SNSF Professor Biozentrum, University of Basel Klingelbergstrasse 50/70 4056 Basel, Switzerland http://www.biozentrum.unibas.ch/hiller/ Email: sebastian.hiller@unibas.ch


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