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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 03-27-2005, 08:27 AM
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The following announcement of NMR postdoctoral positions was found on Dr. Zhou's website

"We are seeking self-motivated individuals as Postdoctoral Associates to study structure and function of protein modular domains and enzymes in signal transduction, chromatin-mediated gene transcription or the RNA interference pathway. Our laboratory is surrounded in a dynamic research environment and equipped with state-of-the-art facilities for biochemical research focused on three-dimensional structural analysis of proteins with high-resolution NMR spectroscopy. Our NMR facility has one 600 MHz and one 500 MHz four-channel Bruker DRX NMR spectrometers. We also have access to a cluster of 800 MHz NMR spectrometers with cryogenic probes at the newly established New York Structural Biology Center (NYSBC).

Postdoctoral Associates: The selected individuals will conduct structure-based functional analysis of proteins and structure-based ligand design. Requirements include a recent Ph.D. degree in Chemistry or Biochemistry with solid background and demonstrated experience in protein biochemistry, molecular biology or protein NMR spectroscopy. Skills in recombinant protein techniques and computer programming are preferred.

We offer competitive salaries and excellent benefits along with the support and challenges for performing cutting-edge science. Individuals with matching qualifications should send a curriculum vitae, a statement of research interests, and names of three references to:

Ming-Ming Zhou, Ph.D.
Structural Biology Program
Department of Physiology and Biophysics
Mount Sinai School of Medicine
1425 Madison Avenue, Box 1677
New York, NY 10029-6574
Phone: (212) 659-8652
Fax: (212) 849-2456
E-mail: Ming-Ming.Zhou@mssm.edu
"
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