PhD student or Postdoctoral fellow

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PhD student or Postdoctoral fellow

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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03-23-2011, 07:41 PM

nmrlearner

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PhD student or Postdoctoral fellow

PhD student or Postdoctoral fellow

Seeking a PhD student or Postdoctoral fellow with NMR experience and interest in Microbial Glycobiology

A PhD or postdoctoral position is available immediately at the University of Alberta. The successful candidate will be jointly supervised by Dr. Roderick Wasylishen (Department of Chemistry and Canada Research Chair in Physical Chemistry, http://ramsey.chem.ualberta.ca/) and Dr. Christine Szymanski (Department of Biological Sciences and Alberta Ingenuity Centre for Carbohydrate Science, http://www.biology.ualberta.ca/facul...ine_szymanski/).

The student will be involved in a multidisciplinary project examining bacterial capsular polysaccharides and developing new techniques to examine bacterial-host interactions using high-resolution magic-angle spinning NMR. The NMR Facilities in the Department of Chemistry are well equipped for the collaborative research project. Specifically we have access to a Varian 600 with a nanoprobe for magic-angle spinning experiments. Details of the other NMR spectrometers in the Department can be found at: http://nmr.chem.ualberta.ca/ and http://ramsey.chem.ualberta.ca/

Applicants should have a strong background in NMR and biological chemistry. Knowledge of solid-state NMR, molecular modeling and NMR programming would be an asset.

Interested applicants should send a single PDF document containing a CV, one-page statement of research interests and contact information of three references to: cszymans@ualberta.ca[IMG]https:/...s.blogspot.com[/IMG]

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