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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Old 12-07-2009, 10:37 AM
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Join Date: Dec 2009
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Red face Ph.D. position in bioNMR - FRA

Ph.D. position in biomolecular computational NMR : Frankfurt am Main, Germany


The research group of Prof. Peter Güntert invites applications for the Ph.D. position funded for three years by a research grant of the DFG (Deutsche Forschungsgemeinschaft or German Research Foundation).


The research project involves application and development of state-of-the-art methods in automated protein structure determination and analysis of high-resolution NMR data.

The facility is the Center for Biomolecular Magnetic Resonance (BMRZ), Institute of Biophysical Chemistry, Goethe University, which is equipped with 13 state-of-the-art NMR spectrometers (400-950 MHz) and excellent computing facilities (incl. clusters and GRID). Location is “Science-City” in the metropolitan city of Frankfurt am Main.

The successful candidate must have a M.Sc. or equivalent degree in a relevant field of science and excellent programming skills in higher programming languages, experience in biomolecular NMR is highly appreciated.

Please send your complete application, including CV, photo, list of publications, and the names and addresses of two references by email or post to:

Dr. Victor Zharavin
Institute of Biophysical Chemistry
Goethe University Frankfurt am Main
Max-von-Laue-Str. 9
60438 Frankfurt am Main, Germany
zharavin (a) em.uni-frankfurt.de
Phone: +49-69-79829367
Fax: +49-69-79829632



Ref: bionmr-119115
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