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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 12-28-2010, 05:29 PM
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Default Marie-Curie funded studentships / postdoc positions at Weizmann

Marie-Curie funded studentships / postdoc positions at Weizmann

In connection to the recent signing of the FP7 Marie Curie Initial Training Network (ITN) METAFLUX - Metabolic Flux Analysis and Cancer, I am looking to hire suitable Ph.D. students or post-doctoral researchers in support of work to be carried out at Weizmann within the 2011-2015 calendar years. These hirings are mainly aimed at citizens of the European Union and/or Associate Member states, who qualify for a full employment contract along with mobility, travel and career development allowances. These are salaries fundable according to the (very generous) Marie Curie rules, which can be found in ftp://ftp.cordis.europa.eu/pub/fp7/d..._201002_en.pdf.

Depending on their status and interests, candidates would enter the Weizmann's Institute PhD or postdoctoral programs, under my supervision (Chemical Physics Department, Faculty of Chemistry) –and in certain cases coadvised by Prof Hadassa Degani (Biological Regulation Department, Faculty of Life Sciences). The candidate’s research would deal with a number of multidisciplinary problems within the field of magnetic resonance; particularly in connection to the use of hyperpolarized nuclei towards in vitro, in cell and biological NMR and MRI characterizations. Our aim is to bring together complementary aspects of dynamic nuclear polarization, and advanced in cell / in vivo MRI/NMR spectroscopies, towards the development of new methodologies to better understand and characterize cancer metabolism. If interested in pursuing a PhD at the Weizmann, the candidate should also have a strong curriculum, a good motivation, and a willingness to be exposed to a variety of topics in magnetic resonance. Background in at least one of the above-mentioned research areas (at a Ph.D. level) is required for a post-doctoral appointment. The training program will include in either case state-of-the-art activities such as network-wide courses, attendance/participation in a variety of workshops, and training experiences in other partner laboratories within the network. Further information on both our graduate or postdoctoral programs, can be found at http://www.fgs.org.il/en/.

The Weizmann Institute is located in a small, affordable and friendly town at the feet of the Judean hills, and is one of Israel's premier scientific institutions. It is a research center whose official language is English and which offers numerous facilities to international visitors, including furnished apartments for students and postdocs. From its inception the Institute has shown an unequivocal commitment to all areas of magnetic resonance and over the years it has made extensive investments in NMR faculty, staff and in infrastructure. As a result the Institute possesses an 800 MHz NMR with a cryoprobe, a 600 MHz widebore triple-resonance solids/liquids/imaging machine, a 3 T whole-body MRI scanner, a 95 GHz pulse EPR spectrometer, 4.7 and 9.4 T animal MRI scanners, an OI Hypersense DNP, para-hydrogen NMR facilities, and numerous (dozens) of other NMR instruments placed in various magnetic resonance buildings as well as several groups involved in all areas of magnetic resonance. The incorporation of significant new MR hardware is also in progress. Those interested in being considered for these positions should send their Vitae and at least two References to lucio.frydman@weizmann.ac.il.[IM...s.blogspot.com[/IMG]


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