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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 03-07-2011, 04:00 PM
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Default Genentech Postdoctoral Fellow

Genentech Postdoctoral Fellow

Genentech Postdoctoral Fellow: Structural Biology/NMR Spectroscopy

We have an opportunity for a highly talented Postdoctoral Fellow to join the Protein NMR Group in the Structural Biology Department at Genentech. Our research encompasses the structural analysis of proteins of therapeutic interest, with an emphasis on determining their conformations and ligand-binding properties.

Genentech is now applying our expertise in protein expression, assay development, antibody engineering and drug design to pursue some of the most challenging therapeutic targets in the human proteome, including G protein-coupled receptors and ion channels. The successful candidate will focus their postdoctoral research on the NMR structural analysis of human membrane proteins involved in ion transport and the mechanisms of their functional regulation. The interaction of these proteins with potent and selective antibody fragments, peptides and/or small molecule inhibitors will also be examined. Significant progress on the high-level expression and purification of the proposed membrane structural targets has already been achieved. Moreover, you would be working with a highly collaborative group of scientists whose expertise includes protein NMR spectroscopy, soluble and membrane protein crystallography, ion channel electrophysiology and assay development.

The protein NMR facility includes dedicated 800, 600, and 500 MHz spectrometers, Linux workstations, a fully equipped protein expression and purification lab with expertise in membrane protein production, and access to the Central California 900 MHz spectrometer.
Requirements:

Recent PhD graduate in Biochemistry, Structural Biology or a related discipline, with a strong publication record providing evidence of productive, independent contributions in science. The applicant must have demonstrated expertise in protein expression and purification, and protein NMR spectroscopy . Prior experience working with membrane proteins will be a strong asset, but is not essential. The successful candidate must be motivated, capable of working independently, and enjoy working in a collaborative setting.

Interested candidates should apply at www.gene.com, but feel free to send their CV and cover letter directly to Dr. Melissa Starovasnik (star@gene.com) and Dr. Christopher Koth (kothc@gene.com). Please visit http://www.gene.com/gene/research/postdoctoral for additional information.


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