ROSETTA manual

		BioNMR > Educational resources > General
ROSETTA manual

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-30-2011, 08:01 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

ROSETTA manual

ROSETTA manual

Manual for ROSETTA 3.1

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[BMNRC community] CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA http://spin.niddk.nih.gov/bax/ http://condor.bmrb.wisc.edu/bbee/rosetta/	nmrlearner	News from other NMR forums	0	07-12-2011 08:26 PM
[Question from NMRWiki Q&A forum] cs23d vs. cs-rosetta cs23d vs. cs-rosetta Does anybody have any thoughts on this ? I dont really know which is better, CS23D or CS-ROSETTA. Clearly they are identical in terms of I/O..... but Im not sure wether one is considered "superior" to the other . In summary, my experience with the online servers for these programs is somewhat limited. Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	01-05-2011 11:40 PM
[KPWU blog] Test reports of CS-Rosetta (3.1) Test reports of CS-Rosetta (3.1) On Dec 23rd, I successfully install Rosetta 3.1 and CS-Rosetta on my iMac and run the test using GB3 protein which was provided within the CS-Rosetta. Here are the rough steps I used to get a simulated GB3 protein. run “runCSRjob3.com” as instructed in the online manual The RunRosetta3.com has to be modified first to http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=236&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	12-28-2010 05:27 AM
[KPWU blog] Install Rosetta-3.1 and CS-Rosetta on Mac OS 10.6 Install Rosetta-3.1 and CS-Rosetta on Mac OS 10.6 A note of my installation in the last 3 days. Machine: iMac 3.06 GHz, core i3, 4 GB Ram , OS 10.6.4 Part A –Rosetta 3.1 First download Rosetta 3.1, all the bundle stuff. –uncompress the bundle file, and keep uncompress the all .tgz files Then download corrections for rosetta_source at here: http://zinc.ucsf.edu/~colin/snow_leopard_tools.tar.gz (see this http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=227&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	12-24-2010 03:24 PM
[NMRpipe Yahoo group] Re: Is there still an nmrpipe manual? Re: Is there still an nmrpipe manual? These pages might be useful: lists of processing options: http://www.nmrscience.com/ref/nmrpipe/ list of programs: http://www.nmrscience.com/ref/prog/ list of More...	NMRpipe Yahoo group news	News from other NMR forums	0	10-26-2010 08:48 PM
[NMRpipe Yahoo group] Is there still an nmrpipe manual? Is there still an nmrpipe manual? Years ago I remember referring to an alphabetical (hard copy) command reference when I wanted clarification of some aspect of pipe processing. Does such still More...	NMRpipe Yahoo group news	News from other NMR forums	0	10-26-2010 08:48 PM
Sparky Manual Sparky Manual slice sparky More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off