Duke University's NMR lectures

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Duke University's NMR lectures

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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08-29-2008, 12:09 PM

timbo

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Duke University's NMR lectures

The Duke University website contains lectures covering a wide range of NMR topics - it would make a great starting point for any newcomers to NMR.

Lecture 1 - Introduction to Protein Structure and NMR
Lecture 2 - Protein and NMR Structural Biology I
Lecture 3 - Protein and NMR Structural Biology II
Lecture 4 - Solution Structures of Native and Denatured Proteins Using RDCs
Lecture 6 - JIGSAW and NMR
Lecture 7 - Computational Protein Design
Lecture 8 - Nonribosomal Code & Protein Design
Lecture 10 - RDCs in NMR Structural Biology
Lecture 11 - Nuclear Vector Replacement
Lecture 12 - Protein Flexibility: Introduction to Inverse Kinematics & Loop Closure Problem
Lecture 15 - Modeling Equilibrium Fluctuations in Proteins
Lecture 16 - Kinetic studies of the initial module PheATE of Gramicidin S Synthetase
Lecture 18 - Generalized Belief Propagation and Free Energy Approximations
Lecture 19 - Carrier Protein Structure and Recognition in Peptide Biosynthesis
Lecture 20 - Protein-Ligand NOE Matching
Lecture 21 - Side-Chain & Backbone Flexibility in Protein Core Design
Lecture 22 - A Topology-Constrained Network Algorithm for NOESY Data Interpretation
Lecture 23 - Mars: Robust Automatic Backbone Assignment and Its Extension

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