New File Added: MolMol for Linux, Unix and Windows

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New File Added: MolMol for Linux, Unix and Windows

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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08-15-2010, 06:24 AM

markber

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Downloads: 17

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New File Added: MolMol for Linux, Unix and Windows

Downloads: A new file has been added by markber:

MolMol for Linux, Unix and Windows

MolMol reference:

MOLMOL: a program for display and analysis of macromolecular structures.
Koradi R, Billeter M, Wüthrich K.
J Mol Graph. 1996 Feb;14(1):51-5, 29-32.

http://www.ncbi.nlm.nih.gov/pubmed/8744573

Link to the download page from Wüthrich group

Link to Patrick Finerty, Jr. site with files and installation instructions for Linux

Link to installation instructions for Ubuntu by Louic S. Vermeer

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08-15-2010, 06:25 AM

markber

Administrator

Join Date: Oct 2008

Posts: 1,538

Points: 38,561, Level: 100

Level up: 0%, 0 Points needed

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Last Achievements

NMR Credits: 1,550

NMR Points: 38,561

Downloads: 17

Uploads: 4

MolMol for Linux, Unix and Windows has been updated!

Did you find this post helpful?

08-15-2010, 06:33 AM

markber

Administrator

Join Date: Oct 2008

Posts: 1,538

Points: 38,561, Level: 100

Level up: 0%, 0 Points needed

Activity: 0%

Last Achievements

NMR Credits: 1,550

NMR Points: 38,561

Downloads: 17

Uploads: 4

MolMol for Linux, Unix and Windows has been updated!

Did you find this post helpful?

10-18-2010, 08:56 AM

markber

Administrator

Join Date: Oct 2008

Posts: 1,538

Points: 38,561, Level: 100

Level up: 0%, 0 Points needed

Activity: 0%

Last Achievements

NMR Credits: 1,550

NMR Points: 38,561

Downloads: 17

Uploads: 4

MolMol for Linux, Unix and Windows has been updated!

Did you find this post helpful?

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