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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Old 10-18-2010, 08:53 AM
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Default New File Added: MOLMOL 2K.2 for Ubuntu 7.04 from NMR.IT

Downloads: A new file has been added by markber:

MOLMOL 2K.2 for Ubuntu 7.04 from NMR.IT

IMPORTANT: This file was not uploaded by MolMol authors or owners of NMR.IT. BioNMR will not provide any support for this version of MolMol nor will be liable for any damages that this file can do to your computer, data, etc.

Below is a copy of installation instructions of MOLMOL 2K.2 for Ubuntu 7.04 that was distributed via NMR.IT as of 11/18/2010.

Quote:
MOLMOL 2K.2, Version 2.1-2.6: Copyright (c) 1994-98 by
Institut fuer Molekularbiologie und Biophysik, ETH Zurich
Spectrospin AG, Faellanden, Switzerland, using Motif/OpenGL

MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR.
We made a molmol binary version and libraries for Ubuntu 7.04; the installation process is quite easy and consists in the following steps:
  • download the self-extracting archive: molmol-2K.2.sh
  • install the package with the command: sudo sh ./molmol-2K.2.sh
  • start molmol recalling it by command line: molmol
The self-extracting archive will create the package directory in /usr/share. To remove completely the software use the commands: sudo rm -rf /usr/share/molmol /usr/bin/molmol .
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  #2  
Old 10-18-2010, 08:57 AM
markber's Avatar
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Join Date: Oct 2008
Posts: 1,538
Points: 38,561, Level: 100
Points: 38,561, Level: 100 Points: 38,561, Level: 100 Points: 38,561, Level: 100
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Level up: 0% Level up: 0% Level up: 0%
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Default

MOLMOL 2K.2 for Ubuntu 7.04 from NMR.IT has been updated!
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  #3  
Old 10-18-2010, 09:00 AM
markber's Avatar
Administrator
 
Join Date: Oct 2008
Posts: 1,538
Points: 38,561, Level: 100
Points: 38,561, Level: 100 Points: 38,561, Level: 100 Points: 38,561, Level: 100
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Level up: 0% Level up: 0% Level up: 0%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
Last Achievements
NMR Credits: 1,550
NMR Points: 38,561
Downloads: 17
Uploads: 4
Default

MOLMOL 2K.2 for Ubuntu 7.04 from NMR.IT has been updated!
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