NANUC 2012 Biomolecular NMR BootCamp

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NANUC 2012 Biomolecular NMR BootCamp

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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02-05-2012, 01:30 AM

nmrlearner

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NANUC 2012 Biomolecular NMR BootCamp

NANUC 2012 Biomolecular NMR BootCamp

NANUC 2012 Biomolecular NMR BootCamp will be hosted by the NMR Facility in Chemistry at the University of Toronto, June 4th to 9th, 2012 on campus.

Our keynote lecturer this year is Prof. Chad Reinstra (UIUC) on BioSolids NMR. We will have Dr. Frank Delaglio (NIDDK, NIH) for the NMRPipe Suite; Dr. Nico Tjandra (LBPC, NIH) with Dynamics and Relaxation; Dr. Bruce Johnson (UMBC) on NMRView; Dr. Charles Schwieters (ISL, NIH) demonstrating Xplor-NIH, and one day on pulse sequence programming (Agilent/Bruker).

More information will be available soon at http://www.nanuc.ca/resources/workshops.php

Please mark your calendars,

Tim

--
Timothy Burrow, Ph.D. MBA
Manager, NMR
University of Toronto 416-978-5728

NMR News!
http://nmrweb.chem.utoronto.ca:8084/users/timburrow/
NMR Web pages:
http://www.chem.utoronto.ca/facilities/nmr/nmr.html

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